Stem-loop cin-mir-126

Accession

MI0007166

Description

Ciona intestinalis cin-mir-126 precursor miRNA

Literature search

3 open access papers mention cin-mir-126
(8 sentences)

Sequence

13444 reads, 937.0 reads per million, 5 experiments

uuucgaugcugCCUUGUUACCUACGGUACCAGGuagaaaguaugucaucuCGUACCGUGAGUAAUAAAGCAUucucgggag
((((((...(((.(((((((.((((((((.((((.((.......)))))).)))))))).))))))).)))...)))))).

Structure

-      ugc   C       C        C    a  aa 
 uuucga   ugC UUGUUAC UACGGUAC AGGu ga  g
 ||||||   ||| ||||||| |||||||| |||| ||  u
 agggcu   ACG AAUAAUG GUGCCAUG ucua cu  a
g      cuU   A       A        C    -  gu 

Annotation confidence High

Genome context

ref|NC_020166.1|: 5485219-5485299 [-]

Mature cin-miR-126-5p

• Accession: MIMAT0015258
• Description: Ciona intestinalis cin-miR-126-5p mature miRNA
• Sequence: 12 - CCUUGUUACCUACGGUACCAGG - 33
• Evidence: experimental ; Illumina [3]

Mature cin-miR-126-3p

• Accession: MIMAT0006101
• Description: Ciona intestinalis cin-miR-126-3p mature miRNA
• Sequence: 51 - CGUACCGUGAGUAAUAAAGCAU - 72
• Evidence: experimental ; Northern [1], Illumina [3]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39


3. PubMed ID: 18047675
   Computational prediction and experimental validation of Ciona intestinalis microRNA genes
   Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
   BMC Genomics (2007) 8:445