miRBase entry: 18047675

Computational prediction and experimental validation of Ciona intestinalis microRNA genes

PubMed ID 18047675
Authors Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
Journal BMC Genomics
Volume 8
Pages 445

There are 27 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
cin-let-7d MI0007153 410 10p 1217625 1217725 - -
cin-mir-31 MI0007156 148 5q 2076043 2076144 + -
cin-mir-34 MI0007158 657 10q 2152513 2152631 - -
cin-mir-92a MI0007160 362 3p 1864426 1864526 + High
cin-mir-126 MI0007166 69 1q 1582551 1582631 + -
cin-mir-141 MI0007168 2406 scaffold_71 128547 128621 + High
cin-mir-153 MI0007169 2078 5q 1421653 1421754 + -
cin-mir-200 MI0007175 1289 scaffold_71 128174 128259 + High
cin-let-7a-1 MI0007149 2547 4q 2082260 2082369 + -
cin-let-7a-2 MI0007150 2500 4q 2083177 2083286 + -
cin-let-7b MI0007151 3522 4q 2082788 2082896 + High
cin-let-7c MI0007152 1001 4q 2082979 2083088 + -
cin-let-7e MI0007154 3 None None -
cin-mir-7 MI0007155 106 1p 1774516 1774593 - -
cin-mir-33 MI0007157 24 None None -
cin-mir-124-1 MI0007164 31455 7q 6301475 6301551 + High
cin-mir-124-2 MI0007165 31163 7q 6301598 6301696 + High
csa-let-7a MI0007181 None reftig_41 1116068 1116169 + -
csa-let-7b MI0007182 None reftig_41 1115604 1115705 + -
csa-let-7c-1 MI0007183 None reftig_41 1114139 1114239 + -
csa-let-7c-2 MI0007184 None reftig_41 1117496 1117597 + -
csa-let-7d MI0007185 None reftig_44 256943 257044 + -
csa-mir-7 MI0007186 None reftig_30 3091327 3091429 + -
csa-mir-124-1 MI0007192 None reftig_262 49392 49494 + -
csa-mir-124-2 MI0007193 None reftig_262 49519 49620 + -
csa-mir-126 MI0007194 None reftig_27 688926 689026 - -
cin-let-7f MI0015777 1273 4q 2082406 2082478 + -



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