Stem-loop cin-mir-33

Accession

MI0007157

Description

Ciona intestinalis cin-mir-33 precursor miRNA

Literature search

2 open access papers mention cin-mir-33
(3 sentences)

Sequence

52 reads, 11.0 reads per million, 3 experiments

ugguaguuuucccuuGUGCAUUGUAGUUGCAUUGCACuguugcauuguggguaaugugacaacaauacaaccgggauuucugcacagucaucauaaauuug
((((((...((((...((.(((((.((((((((((.(((........))))))))))))).))))).))...))))...)))).))...............

Structure

---------------  -    uuu    uuG  C     A          A   uug 
               ug guag   uccc   UG AUUGU GUUGCAUUGC Cug   c
               || ||||   ||||   || ||||| |||||||||| |||    
               ac cguc   aggg   ac uaaca caguguaaug ggu   a
guuuaaauacuacug  a    uuu    cca  a     a          -   guu 

Annotation confidence Not enough data

Genome context

ref|NW_004190509.1|: 34816-34916 [-]

Mature cin-miR-33-5p

• Accession: MIMAT0006093
• Description: Ciona intestinalis cin-miR-33-5p mature miRNA
• Sequence: 16 - GUGCAUUGUAGUUGCAUUGCAC - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39