miRBase entry: csa-mir-124-1

Stem-loop csa-mir-124-1


Accession
MI0007192
Description
Ciona savignyi csa-mir-124-1 precursor miRNA

Literature search
2 open access papers mention csa-mir-124-1
(2 sentences)

Sequence

uuauaaucgacgucauagccaaguucgaucguguuuauuguggaccuugccgugugacgucacagUAAGGCACGCGGUGAAUGCCAAcgaacucgcgcugcau
...............(((((.((((((...((((((((((((..((((((.(((......))).))))))..))))))))))))...)))))).).))))...

Structure
uuauaaucgacguca    - a      auc            ga      c   ug 
               uagc c aguucg   guguuuauugug  ccuugc gug  a
               |||| | ||||||   ||||||||||||  |||||| |||   
               gucg g ucaagc   CGUAAGUGGCGC  GGAAUg cac  c
------------uac    c c      AAC            AC      a   ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
reftig_262: 49392-49494 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from csa-mir-124-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csa-miR-124

Accession MIMAT0006126
Description Ciona savignyi csa-miR-124 mature miRNA
Sequence 66 - UAAGGCACGCGGUGAAUGCCAA - 87
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080