Stem-loop cin-mir-216

Accession

MI0007176

Description

Ciona intestinalis cin-mir-216 precursor miRNA

Sequence

816 reads, 311 reads per million, 2 experiments

uuacucgagccugcuUAAUCUCAGCUGGCAAUCUGUGAugucauaaucaucacggggcaagaugggauuuugcugacuaaggguuuaacgacucagcguauuau
..((((.((.(.((..(((((((.((.((..(((((((((.......))))))))))).)).)))))))..)).).))..))))...(((......))).....

Structure

------------------uu    -g  c u  uU       G  G  AA         uc 
                    acuc  ag c gc  AAUCUCA CU GC  UCUGUGAug  a
                    ||||  || | ||  ||||||| || ||  |||||||||  u
                    uggg  uc g cg  uuagggu ga cg  gggcacuac  a
uauuaugcgacucagcaauu    aa  a u  uu       a  a  --         ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature cin-miR-216

• Accession: MIMAT0006111
• Description: Ciona intestinalis cin-miR-216 mature miRNA
• Sequence: 16 - UAAUCUCAGCUGGCAAUCUGUGA - 38
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080