miRBase entry: cin-mir-78

Stem-loop cin-mir-78


Accession
MI0007159
Description
Ciona intestinalis cin-mir-78 precursor miRNA


Sequence

auuagauguugagaggacacuuaucgggcaucaguuugugaugaacagcgucauggaugaaacUGGAGGCCUGGGUGUUUCCUGuauaguugauaaugg
(((((.(((..((.(((((((...(((((.(((((((((((((.....)))))).....)))))))..)))))))))))).))..))).))))).....

Structure
-----     a   ug  a       uau     -a       -----      a 
     auuag ugu  ag ggacacu   cgggc  ucaguuu     gugaug a
     ||||| |||  || |||||||   |||||  |||||||     |||||| c
     uaguu aua  UC UUUGUGG   GUCCG  GGUcaaa     uacugc a
gguaa     g   uG  C       ---     GA       guagg      g 


Annotation confidence Not enough data
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Genome context
2q: 8003792-8003890 [+]

Database links

Mature cin-miR-78

Accession MIMAT0006095
Description Ciona intestinalis cin-miR-78 mature miRNA
Sequence 64 - UGGAGGCCUGGGUGUUUCCUG - 84
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080