Stem-loop csa-mir-1473

Accession

MI0007131

Description

Ciona savignyi csa-mir-1473 precursor miRNA

Sequence

cgaaacaucauuaaauaaccuacgugggucuggcucccaaaucuucgaucuugugagauauauucUCAAGCUCGGUUUUAUGGGUGCcgcauccaacgaca
......................(((((((.((((.((((.....((((.((..(((((.....))))))).)))).....)))).)))).)))).)))...

Structure

cgaaacaucauuaaauaaccua   -    c    u    aaucu    u  ug     u 
                      cgu gggu uggc ccca     ucga cu  ugaga a
                      ||| |||| |||| ||||     |||| ||  ||||| u
                      gca ccua gcCG GGGU     GGCU GA  ACUcu a
-------------------aca   a    c    U    AUUUU    C  --     u 

Annotation confidence Not enough data

Genome context

reftig_44: 256366-256466 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csa-mir-1473

Mature csa-miR-1473

• Accession: MIMAT0006069
• Description: Ciona savignyi csa-miR-1473 mature miRNA
• Sequence: 66 - UCAAGCUCGGUUUUAUGGGUGC - 87
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080