Stem-loop csa-mir-124-1

Accession

MI0007192

Description

Ciona savignyi csa-mir-124-1 precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

2 open access papers mention csa-mir-124-1
(2 sentences)

Sequence

uuauaaucgacgucauagccaaguucgaucguguuuauuguggaccuugccgugugacgucacagUAAGGCACGCGGUGAAUGCCAAcgaacucgcgcugcau
...............(((((.((((((...((((((((((((..((((((.(((......))).))))))..))))))))))))...)))))).).))))...

Structure

uuauaaucgacguca    - a      auc            ga      c   ug 
               uagc c aguucg   guguuuauugug  ccuugc gug  a
               |||| | ||||||   ||||||||||||  |||||| |||   
               gucg g ucaagc   CGUAAGUGGCGC  GGAAUg cac  c
------------uac    c c      AAC            AC      a   ug 

Annotation confidence Not enough data

Genome context

reftig_262: 49392-49494 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csa-mir-124-1

Mature csa-miR-124

• Accession: MIMAT0006126
• Description: Ciona savignyi csa-miR-124 mature miRNA
• Sequence: 66 - UAAGGCACGCGGUGAAUGCCAA - 87
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080