Stem-loop csa-mir-219

Accession

MI0007204

Description

Ciona savignyi csa-mir-219 precursor miRNA

Gene family

MIPF0000044; mir-219

Sequence

auggcgacuguuucaUGAUUGUCCAAACGCAAUACAgguguuacaauaaauucuguguuuucguauggacaucguaauacagagugucacaugcuucaucaa
.(((((.((((...(((((.(((((.(((.((((((((.............))))))))..))).))))))))))...))))..))))).............

Structure

------------a     -a    uuc     U     A   -C        uguua 
             uggcg  cugu   aUGAU GUCCA ACG  AAUACAgg     c
             |||||  ||||   ||||| ||||| |||  ||||||||     a
             acugu  gaca   ugcua caggu ugc  uugugucu     a
aacuacuucguac     ga    uaa     -     a   uu        uaaau 

Annotation confidence Not enough data

Genome context

reftig_67: 317190-317291 [+]

Mature csa-miR-219

• Accession: MIMAT0006137
• Description: Ciona savignyi csa-miR-219 mature miRNA
• Sequence: 16 - UGAUUGUCCAAACGCAAUACA - 36
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080