Stem-loop csa-mir-281

Accession

MI0007205

Description

Ciona savignyi csa-mir-281 precursor miRNA

Gene family

MIPF0000472; mir-281

Sequence

aauucguuuauuuuacaugucaagugcgugucggaggguuauuucaugccggucuagcauugcgcUGUCAUGGAGUUGCUCUCUCAUUggcgcuauggcuua
..................(((((((((.....(((((((.((((((((.((((...((...)))))).)))))))).))))))).....))))).))))...

Structure

aauucguuuauuuuacau    -     guguc       u        c    cua  a 
                  guca agugc     ggagggu auuucaug cggu   gc  
                  |||| |||||     ||||||| |||||||| ||||   || u
                  cggu ucgcg     UCUCUCG UGAGGUAC GUcg   cg  
---------------auu    a     gUUAC       U        U    ---  u 

Annotation confidence Not enough data

Genome context

reftig_67: 861516-861617 [+]

Mature csa-miR-281

• Accession: MIMAT0006138
• Description: Ciona savignyi csa-miR-281 mature miRNA
• Sequence: 66 - UGUCAUGGAGUUGCUCUCUCAUU - 88
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080