Stem-loop mdo-mir-1540a

Accession

MI0007263

Description

Monodelphis domestica mdo-mir-1540a precursor miRNA

Sequence

reads, None reads per million, experiments

uagcgggggUGAUUCCAUAGAGCGCAUGUccauccccagagagccagagcauaugcuccauggaaucacccccacca
....((((((((((((((.(((((.((((.(...............).)))).))))).))))))))))))))....

Structure

uagc              A     C    c aucccc 
    gggggUGAUUCCAU GAGCG AUGU c      a
    |||||||||||||| ||||| |||| |      g
    cccccacuaaggua cucgu uacg g      a
acca              c     a    a accgag 

Annotation confidence Not enough data

Comments

This sequence is referred to by the unofficial identifier Mdo-10 in [1].

Genome context

chr1: 580149257-580149333 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1540a

Mature mdo-miR-1540a

• Accession: MIMAT0006139
• Description: Monodelphis domestica mdo-miR-1540a mature miRNA
• Sequence: 10 - UGAUUCCAUAGAGCGCAUGU - 29
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72