miRBase entry: mdo-mir-1543

Stem-loop mdo-mir-1543


Accession
MI0007267
Description
Monodelphis domestica mdo-mir-1543 precursor miRNA
Gene family
MIPF0002080; mir-1543


Sequence

733 reads, 40 reads per million, 3 experiments
gauagugcuuugcaccacugagaguggauuaacuuccuuuaugaagUUAGUCCUAGUCUAGGUGCACAcauguc
(((((((...((((((....(((.((((((((((((......))))))))))).).))).))))))))).))))

Structure
    -   cuu      acug   g -           cu 
gaua gug   ugcacc    aga u ggauuaacuuc  u
|||| |||   ||||||    ||| | |||||||||||   
cugu cAC   ACGUGG    UCU A CCUGAUUgaag  u
    a   ---      ---A   G U           ua 


Annotation confidence Not enough data
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Comments
This sequence is referred to by the unofficial identifier Mdo-174 in [1].

Genome context
chr1: 330615489-330615562 [+]

Database links

Mature mdo-miR-1543

Accession MIMAT0006142
Description Monodelphis domestica mdo-miR-1543 mature miRNA
Sequence 47 - UUAGUCCUAGUCUAGGUGCACA - 68
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72