Stem-loop mdo-mir-1545a

Accession

MI0007270

Description

Monodelphis domestica mdo-mir-1545a precursor miRNA

Gene family

MIPF0001711; mir-1545

Sequence

2373 reads, 49 reads per million, 5 experiments

ccggacacAGUGCGCAGGGAUAGAUAAGAGGucacuuuagaauccACUUUCCAUCCCUUGCACUGUuuccgc
.((((.((((((((.((((((.((.(((.((((......))..)).))))).)))))))))))))).)))).

Structure

c    c        C      A  U   A  --  ac 
 cgga acAGUGCG AGGGAU GA AAG GG  uc  u
 |||| |||||||| |||||| || ||| ||  ||   
 gccu UGUCACGU UCCCUA CU UUC cc  ag  u
c    u        -      C  -   A  ua  au 

Annotation confidence High

Comments

This sequence is referred to by the unofficial identifier Mdo-253a in [1].

Genome context

chrX: 14003847-14003918 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from mdo-mir-1545a

Mature mdo-miR-1545a-3p

• Accession: MIMAT0006145
• Description: Monodelphis domestica mdo-miR-1545a-3p mature miRNA
• Sequence: 46 - ACUUUCCAUCCCUUGCACUGU - 66
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdo-miR-1545a-5p

• Accession: MIMAT0026769
• Description: Monodelphis domestica mdo-miR-1545a-5p mature miRNA
• Sequence: 9 - AGUGCGCAGGGAUAGAUAAGAGG - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45