Stem-loop sequence gga-mir-135b

Accession

MI0007390 (change log)

Description

Gallus gallus miR-135b stem-loop

Literature search

7 open access papers mention gga-mir-135b
(10 sentences)

Stem-loop

   ----------------   g a       uugu   g    g 
5'                 ggu a agagggc    ggg aaag g
                   ||| | |||||||    ||| ||||  
3'                 ucg u ucucuug    uuc uuuc a
   ucguuuuccuuauuuu   g a       ---u   g    c 

Deep sequencing

521 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr3: 37593116-37593182 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR135B
• miRBase Tracker:MI0007390

Mature sequence gga-miR-135b

• Accession: MIMAT0007536
• Sequence: 45 - uauggcuuuuuauuccuuuu - 64
• Deep sequencing: 520 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-135b
  • miRDB:gga-miR-135b

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).