Stem-loop sequence gga-mir-16c

Accession

MI0007563 (change log)

Description

Gallus gallus miR-16c stem-loop

Gene family

MIPF0000006; mir-15

Literature search

23 open access papers mention gga-mir-16c
(225 sentences)

Stem-loop

      cu       cgua          ---u g   a 
5' gcu  agcagca    aauacuggag    g ggg u
   |||  |||||||    ||||||||||    | |||  
3' uga  ucgucgu    uuaugaccuc    u ucc c
      uu       uacg          ucgu g   g 

Deep sequencing

218035 reads, 2.78e+03 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 4071445-4071515 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-16c

• gga-mir-15c: chr4: 4071811-4071886 [-]
• gga-mir-16c: chr4: 4071445-4071515 [-]

Database links

• EntrezGene:MIR16C
• miRBase Tracker:MI0007563

Mature sequence gga-miR-16c-5p

• Accession: MIMAT0007739
• Sequence: 5 - uagcagcacguaaauacuggag - 26
• Deep sequencing: 218029 reads, 5 experiments
• Evidence: experimental; Illumina [1,3], Northern [2]
• Predicted targets:
  • TargetScanVert:gga-miR-16c-5p
  • miRDB:gga-miR-16c-5p

Mature sequence gga-miR-16c-3p

• Accession: MIMAT0026786
• Sequence: 48 - ccaguauugcauugcugcuuua - 69
• Deep sequencing: 4 reads, 2 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-16c-3p
  • miRDB:gga-miR-16c-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).
2. PMID:18511220 "Identification of novel chicken microRNAs and analysis of their genomic organization" Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH Gene. 418:34-40(2008).
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).