Stem-loop vvi-MIR169n

Accession

MI0007944

Description

Vitis vinifera vvi-MIR169n precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169n
(15 sentences)

Sequence

3704 reads, 251 reads per million, 2 experiments

ugaguggaauaGAGCCAAGGAUGACUUGCCGGcaacugcagcaaggcauaggguuuaacuggucauaacuggcaagcaucugaggcucuauuucacccucu
...(((((((((((((..(((((.((((((((......(((..((((.....))))..))).......)))))))))))))..))))))))))))).....

Structure

--uga             AA     A        -caacug   ca    a 
     guggaauaGAGCC  GGAUG CUUGCCGG       cag  aggc u
     |||||||||||||  ||||| ||||||||       |||  |||| a
     cacuuuaucucgg  ucuac gaacgguc       guc  uuug g
ucucc             ag     -        aauacug   aa    g 

Annotation confidence Not enough data

Genome context

chr11: 16380240-16380340 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169n

Mature vvi-miR169n

• Accession: MIMAT0006549
• Description: Vitis vinifera vvi-miR169n mature miRNA
• Sequence: 12 - GAGCCAAGGAUGACUUGCCGG - 32
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558