Stem-loop vvi-MIR169v

Accession

MI0007947

Description

Vitis vinifera vvi-MIR169v precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169v
(17 sentences)

Sequence

1521 reads, 103 reads per million, 2 experiments

agggaggaacaAAGCCAAGGAUGAAUUGCCGGcgaugaaaguaggcagcuuuguccauggaucggcaauuuauuucuuggcuauguugggcucucu
((((((.((((.(((((((((((((((((((((.((((((((.....)))))...))).).))))))))))).))))))))).))))...))))))

Structure

      --g    A         -           - g   ---     a 
agggag   aaca AGCCAAGGA UGAAUUGCCGG c aug   aaagu g
||||||   |||| ||||||||| ||||||||||| | |||   ||||| g
ucucuc   uugu ucgguucuu auuuaacggcu g uac   uuucg c
      ggg    a         u           a g   cug     a 

Annotation confidence Not enough data

Genome context

chr11: 16468025-16468120 [+]

Mature vvi-miR169v

• Accession: MIMAT0006552
• Description: Vitis vinifera vvi-miR169v mature miRNA
• Sequence: 12 - AAGCCAAGGAUGAAUUGCCGG - 32
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558