Stem-loop vvi-MIR169x

Accession

MI0007949

Description

Vitis vinifera vvi-MIR169x precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

8 open access papers mention vvi-MIR169x
(19 sentences)

Sequence

274 reads, 19 reads per million, 2 experiments

gucucgucuggUAGCCAAGGAUGACUUGCCUAaauccaccagguuucaaaacacugaauguaauuauccacaaagcgauuccguggucuuuaggcagucauuccuucggcuaaacugaccggcuc
(((..(((...(((((((((((((((.(((((((.((((..((..((.......((.(((....))).))......))..))))))..)))))))))))).))))).)))))....))).)))..

Structure

--   uc   -ugg     -     -     U       -u    ca  uu  aaaacac  a   u 
  guc  guc    UAGCC AAGGA UGACU GCCUAaa  ccac  gg  uc       ug aug a
  |||  |||    ||||| ||||| ||||| |||||||  ||||  ||  ||       || |||  
  cgg  cag    aucgg uuccu acuga cggauuu  ggug  cc  ag       ac uau a
cu   -c   ucaa     c     u     -       cu    --  uu  -cgaaac  c   u 

Annotation confidence Not enough data

Genome context

chr17: 355713-355837 [-]

Mature vvi-miR169x

• Accession: MIMAT0006554
• Description: Vitis vinifera vvi-miR169x mature miRNA
• Sequence: 12 - UAGCCAAGGAUGACUUGCCUA - 32
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558