Stem-loop vvi-MIR403a

Accession

MI0007964

Description

Vitis vinifera vvi-MIR403a precursor miRNA

Gene family

MIPF0000290; MIR403

Literature search

2 open access papers mention vvi-MIR403a
(9 sentences)

Sequence

310 reads, 21 reads per million, 2 experiments

gcacaucucaaguuugugcgugaaucaaaccccaucguagccguccauaucuucggguacuaaucacggggcgauucgacggcgUUAGAUUCACGCACAAACUCGugaguucuga
.((...((((((((((((((((((((.(((.........((((((.....((((((((....))).)))))......))))))))).))))))))))))))))..))))...)).

Structure

g  cau    --                a   cccaucgua      -cauau     -   a 
 ca   cuca  aguuugugcgugaauc aac         gccguc      cuucg ggu c
 ||   ||||  |||||||||||||||| |||         ||||||      ||||| |||  
 gu   gagu  UCAAACACGCACUUAG UUg         cggcag      ggggc cua u
a  cuu    GC                A   ---------      cuuagc     a   a 

Annotation confidence Not enough data

Genome context

chr5: 65247-65361 [+]

Mature vvi-miR403a

• Accession: MIMAT0006569
• Description: Vitis vinifera vvi-miR403a mature miRNA
• Sequence: 85 - UUAGAUUCACGCACAAACUCG - 105
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558