miRBase entry: cfa-let-7e

Stem-loop cfa-let-7e

Accession

MI0008004

Description

Canis familiaris cfa-let-7e precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

UGAGGUAGGAGGUUGUAUAGUUgaggaggacacccacggagaucacuauacggccuccuagcuuucc
.(((.((((((((((((((((.((...(........).....)))))))))))))))))).)))...

Structure

--U   G                U  --gga gac 
   GAG UAGGAGGUUGUAUAGU ga     g   a
   ||| |||||||||||||||| ||     |    
   uuc auccuccggcauauca cu     c   c
ccu   g                -  agagg acc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr1: 105400740-105400806 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-let-7e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-let-7e

Accession	MIMAT0006608
Description	Canis familiaris cfa-let-7e mature miRNA
Sequence	1 - UGAGGUAGGAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415