miRBase entry: cfa-mir-24-1

Stem-loop cfa-mir-24-1

Accession

MI0008010

Description

Canis familiaris cfa-mir-24-1 precursor miRNA

Gene family

MIPF0000041; mir-24

Sequence

ggugccuacugagcugauaucaguucucauuguacacacUGGCUCAGUUCAGCAGGAACAGG
.((.(((.(((((((((..(((((.............))))).))))))))).))).))...

Structure

--g  g   a         ua     ucuca 
   gu ccu cugagcuga  ucagu     u
   || ||| |||||||||  |||||     u
   CA GGA GACUUGACU  GGUca     g
GGA  A   C         -C     cacau

Annotation confidence Not enough data

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Genome context

chr1: 71677608-71677669 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-24-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-24

Accession	MIMAT0006614
Description	Canis familiaris cfa-miR-24 mature miRNA
Sequence	40 - UGGCUCAGUUCAGCAGGAACAGG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415