miRBase entry: cfa-mir-425

Stem-loop cfa-mir-425

Accession

MI0008038

Description

Canis familiaris cfa-mir-425 precursor miRNA

Gene family

MIPF0000242; mir-425

Sequence

AAUGACACGAUCACUCCCGUUGAgugggcacccaagaagccaucgggaaugucguguccgccc
...(((((((.((.(((((....((((............))))))))).))))))))).....

Structure

--AAU       U  C     UUGA    gcacc 
     GACACGA CA UCCCG    gugg     c
     ||||||| || |||||    ||||      
     cugugcu gu agggc    uacc     a
cccgc       -  a     ----    gaaga

Annotation confidence Not enough data

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Genome context

chr20: 40144613-40144675 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-425

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-425

Accession	MIMAT0006639
Description	Canis familiaris cfa-miR-425 mature miRNA
Sequence	1 - AAUGACACGAUCACUCCCGUUGA - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415