Stem-loop cfa-mir-1839

Accession

MI0008087

Description

Canis familiaris cfa-mir-1839 precursor miRNA

Gene family

MIPF0000702; mir-1839

Sequence

aaggaaAAGGUAGAUAGAACAGGUCUUGuuagcaaaauaaauucaagaccuacuuaaucuaccaacagcaauu
........(((((((.((..((((((((...............))))))))..)).)))))))..........

Structure

--aaggaaAA       A  AC        uuagca 
          GGUAGAU GA  AGGUCUUG      a
          ||||||| ||  ||||||||      a
          ccaucua uu  uccagaac      a
uuaacgacaa       a  ca        uuaaau 

Annotation confidence Not enough data

Genome context

chr3: 54579692-54579764 [+]

Mature cfa-miR-1839

• Accession: MIMAT0006677
• Description: Canis familiaris cfa-miR-1839 mature miRNA
• Sequence: 7 - AAGGUAGAUAGAACAGGUCUUG - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415