Stem-loop sequence cfa-mir-380

AccessionMI0008136 (change log)
DescriptionCanis familiaris miR-380 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop
   -aug  u       ga       c  gc 
5'     gu gaccaua  acaugcg ua  u
       || |||||||  ||||||| ||   
3'     ca cugguau  uguaugc gu  c
   ucug  c       aa       u  au 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (CanFam3.1; GCA_000002285.2) Overlapping transcripts
chr8: 69256764-69256820 [+]
sense
ENSCAFT00000039930 ; cfa-mir-380-201; exon 1
Clustered miRNAs
< 10kb from cfa-mir-380
cfa-mir-379chr8: 69253808-69253866 [+]
cfa-mir-411chr8: 69255094-69255151 [+]
cfa-mir-299chr8: 69255548-69255610 [+]
cfa-mir-380chr8: 69256764-69256820 [+]
cfa-mir-323chr8: 69257494-69257549 [+]
cfa-mir-758chr8: 69257782-69257862 [+]
cfa-mir-329bchr8: 69258528-69258607 [+]
cfa-mir-329achr8: 69258855-69258914 [+]
cfa-mir-494chr8: 69261385-69261465 [+]
cfa-mir-543chr8: 69263406-69263463 [+]
cfa-mir-495chr8: 69265169-69265226 [+]
Database links

Mature sequence cfa-miR-380

Accession MIMAT0006717
Sequence

37 - 

uauguaauaugguccacgucu

 - 57

Get sequence
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).