miRBase entry: cfa-mir-329a

Stem-loop cfa-mir-329a


Accession
MI0008138
Description
Canis familiaris cfa-mir-329a precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

AGAGGUUUUCUGGGUUUCUGUUUcuuucaugaggaugaaacacacccaguuaaccucuuu
(((((((..((((((...((((((.(((....))).)))))).))))))..)))))))..

Structure
--       UU      UUC      u   a 
  AGAGGUU  CUGGGU   UGUUUc uuc u
  |||||||  ||||||   |||||| |||  
  ucuccaa  gaccca   acaaag agg g
uu       uu      --c      u   a 


Annotation confidence Not enough data
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Genome context
chr8: 69258855-69258914 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from cfa-mir-329a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-329a

Accession MIMAT0006719
Description Canis familiaris cfa-miR-329a mature miRNA
Sequence 1 - AGAGGUUUUCUGGGUUUCUGUUU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415