Stem-loop sequence cfa-mir-543

AccessionMI0008139 (change log)
DescriptionCanis familiaris miR-543 stem-loop
Gene family MIPF0000110; mir-329
Stem-loop
   --     u  -     ---u    u    uu 
5'   gaagu gc ccgug    uuuu ucgc  u
     ||||| || |||||    |||| ||||  a
3'   cuuca cg ggcgc    aaag agug  u
   uu     -  u     uuac    c    uu 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (CanFam3.1; GCA_000002285.2) Overlapping transcripts
chr8: 69263406-69263463 [+]
sense
ENSCAFT00000040021 ; cfa-mir-543-201; exon 1
Clustered miRNAs
< 10kb from cfa-mir-543
cfa-mir-379chr8: 69253808-69253866 [+]
cfa-mir-411chr8: 69255094-69255151 [+]
cfa-mir-299chr8: 69255548-69255610 [+]
cfa-mir-380chr8: 69256764-69256820 [+]
cfa-mir-323chr8: 69257494-69257549 [+]
cfa-mir-758chr8: 69257782-69257862 [+]
cfa-mir-329bchr8: 69258528-69258607 [+]
cfa-mir-329achr8: 69258855-69258914 [+]
cfa-mir-494chr8: 69261385-69261465 [+]
cfa-mir-543chr8: 69263406-69263463 [+]
cfa-mir-495chr8: 69265169-69265226 [+]
cfa-mir-3958chr8: 69267134-69267274 [+]
cfa-mir-376a-3chr8: 69269752-69269810 [+]
cfa-mir-376cchr8: 69270100-69270185 [+]
cfa-mir-376a-2chr8: 69270499-69270556 [+]
cfa-mir-376bchr8: 69270858-69270956 [+]
cfa-mir-376a-1chr8: 69271259-69271316 [+]
cfa-mir-300chr8: 69271815-69271892 [+]
cfa-mir-1185chr8: 69273204-69273332 [+]
Database links

Mature sequence cfa-miR-543

Accession MIMAT0006720
Sequence

37 - 

aaacauucgcggugcacuucuu

 - 58

Get sequence
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).