miRBase entry: cfa-mir-144

Stem-loop cfa-mir-144

Accession

MI0008158

Description

Canis familiaris cfa-mir-144 precursor miRNA

Gene family

MIPF0000093; mir-144

Sequence

aggauaucaucauauacuguaaguuugcgacaagauacUACAGUAUAGAUGAUGUACUAG
.((((((((((.(((((((((.((((......))))..))))))))))))))))).))..

Structure

-a  -        a         -a    gc 
  gg auaucauc uauacugua  guuu  g
  || |||||||| |||||||||  ||||   
  UC UGUAGUAG AUAUGACAU  uaga  a
GA  A        -         ca    ac

Annotation confidence Not enough data

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Genome context

chr9: 43031035-43031094 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-144

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-144

Accession	MIMAT0006734
Description	Canis familiaris cfa-miR-144 mature miRNA
Sequence	39 - UACAGUAUAGAUGAUGUACUAG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415