miRBase entry: cfa-mir-424

Stem-loop cfa-mir-424

Accession

MI0008169

Description

Canis familiaris cfa-mir-424 precursor miRNA

Gene family

MIPF0000164; mir-322

Sequence

agcagcaauucauguuuugaagugcuuuaaaugguuCAAAACGUGAGGCGCUGCUAU
((((((..((((((((((((...(((......)))))))))))))))..))))))..

Structure

--      aa            agu   uu 
  agcagc  uucauguuuuga   gcu  a
  ||||||  ||||||||||||   |||   
  UCGUCG  GAGUGCAAAACu   ugg  a
UA      CG            ---   ua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chrX: 105183437-105183493 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-424

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-424

Accession	MIMAT0006745
Description	Canis familiaris cfa-miR-424 mature miRNA
Sequence	37 - CAAAACGUGAGGCGCUGCUAU - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415