miRBase entry: ssc-mir-17

Stem-loop ssc-mir-17


Accession
MI0008214
Description
Sus scrofa ssc-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
30 open access papers mention ssc-mir-17
(84 sentences)

Sequence

334 reads, 201 reads per million, 12 experiments
gaauaauguCAAAGUGCUUACAGUGCAGGUAGugauaaugugcaucuACUGCAGUGAAGGCACUUGUAGcauuaugg
..(((((((..((((((((.((.(((((.(((((........)).)))))))).)).))))))))...)))))))..

Structure
ga       -CA        A  G     G   -  aua 
  auaaugu   AAGUGCUU CA UGCAG UAG ug   a
  |||||||   |||||||| || ||||| ||| ||    
  uauuacG   UUCACGGA GU ACGUC Auc ac   u
gg       AUG        A  G     -   u  gug 


Annotation confidence Not enough data
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Genome context
chr11: 66610060-66610136 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-17-5p

Accession MIMAT0007755
Description Sus scrofa ssc-miR-17-5p mature miRNA
Sequence 10 - CAAAGUGCUUACAGUGCAGGUAG - 32
Evidence experimental
cloned [1,3], Illumina [2,4-5]

Mature ssc-miR-17-3p

Accession MIMAT0015268
Description Sus scrofa ssc-miR-17-3p mature miRNA
Sequence 48 - ACUGCAGUGAAGGCACUUGUAG - 69
Evidence experimental
Illumina [2,4-5]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100