miRBase entry: ssc-mir-30b

Stem-loop ssc-mir-30b


Accession
MI0008215
Description
Sus scrofa ssc-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
20 open access papers mention ssc-mir-30b
(38 sentences)

Sequence

147 reads, 100 reads per million, 10 experiments
uuucaguucgUGUAAACAUCCUACACUCAGCUguaauacauggauuggCUGGGAGGUGGAUGUUUACUUcagcuga
..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))

Structure
uu      cgU          U  -A        uaaua 
  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
  ||||||   |||||||||| ||  ||||||||      
  agucga   CAUUUGUAGG UG  GGGUCggu     a
--      cUU          -  GA        uaggu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 6717643-6717718 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-30b-5p

Accession MIMAT0007756
Description Sus scrofa ssc-miR-30b-5p mature miRNA
Sequence 11 - UGUAAACAUCCUACACUCAGCU - 32
Evidence experimental
cloned [1,4], 454 [2], Illumina [3,5-6]

Mature ssc-miR-30b-3p

Accession MIMAT0015269
Description Sus scrofa ssc-miR-30b-3p mature miRNA
Sequence 49 - CUGGGAGGUGGAUGUUUACUU - 69
Evidence experimental
Illumina [3,5-6]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  5. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  6. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100