miRBase entry: ssc-mir-185

Stem-loop ssc-mir-185


Accession
MI0008218
Description
Sus scrofa ssc-mir-185 precursor miRNA
Gene family
MIPF0000202; mir-185

Literature search
5 open access papers mention ssc-mir-185
(10 sentences)

Sequence

212 reads, 125 reads per million, 11 experiments
ggugagggauUGGAGAGAAAGGCAGUUCCUGAugguccccuccccaggggcuggcuuuccucugguccuucccucc
((.((((((((((((.(((((.(((((((((..((......)).))))))))).)))))))))))))))))))...

Structure
---  u            A     G         Au  uc 
   gg gagggauUGGAG GAAAG CAGUUCCUG  gg  c
   || |||||||||||| ||||| |||||||||  ||   
   cc cuuccuggucuc cuuuc gucggggac  cc  c
ccu  -            -     g         -c  uc 


Annotation confidence Not enough data
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Genome context
chr14: 55086524-55086599 [+]

Database links

Mature ssc-miR-185

Accession MIMAT0007759
Description Sus scrofa ssc-miR-185 mature miRNA
Sequence 11 - UGGAGAGAAAGGCAGUUCCUGA - 32
Evidence experimental
cloned [1], Illumina [2-4]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100