miRBase entry: ssc-mir-199b

Stem-loop ssc-mir-199b


Accession
MI0008219
Description
Sus scrofa ssc-mir-199b precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
12 open access papers mention ssc-mir-199b
(15 sentences)

Sequence

3334 reads, 947 reads per million, 15 experiments
ccgucuaCCCAGUGUUUAGACUAUCUGUUcaggacucccaaauugUACAGUAGUCUGCACAUUGGUUaggcugg
(((((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).))))).))

Structure
  -     C       U       U    U   gacu 
cc gucua CCAGUGU UAGACUA CUGU cag    c
|| ||||| ||||||| ||||||| |||| |||     
gg cggaU GGUUACA GUCUGAU GACA guu    c
  u     U       C       -    U   aaac 


Annotation confidence High
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Genome context
chr1: 302681826-302681899 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-199b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-199b-5p

Accession MIMAT0017339
Description Sus scrofa ssc-miR-199b-5p mature miRNA
Sequence 8 - CCCAGUGUUUAGACUAUCUGUU - 29
Evidence experimental
cloned [3], Illumina [4-5]

Mature ssc-miR-199b-3p

Accession MIMAT0007760
Description Sus scrofa ssc-miR-199b-3p mature miRNA
Sequence 46 - UACAGUAGUCUGCACAUUGGUU - 67
Evidence experimental
cloned [1], Illumina [2,4-5]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100