miRBase entry: ssc-mir-221

Stem-loop ssc-mir-221


Accession
MI0008221
Description
Sus scrofa ssc-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
23 open access papers mention ssc-mir-221
(84 sentences)

Sequence

1208 reads, 469 reads per million, 15 experiments
ugaACCUGGCAUACAAUGUAGAUUUCUGUguuuguugggcaacAGCUACAUUGUCUGCUGGGUUUcaggc
.((((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))))).....

Structure
----u          U         AUUU    -    g 
     gaACCUGGCA ACAAUGUAG    CUGU guuu  
     |||||||||| |||||||||    |||| |||| u
     UUUGGGUCGU UGUUACAUC    GAca cggg  
cggac          C         ----    a    u 


Annotation confidence Not enough data
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Genome context
chrX: 45274873-45274942 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-221-3p

Accession MIMAT0007762
Description Sus scrofa ssc-miR-221-3p mature miRNA
Sequence 44 - AGCUACAUUGUCUGCUGGGUUU - 65
Evidence experimental
cloned [1], Illumina [2-4]

Mature ssc-miR-221-5p

Accession MIMAT0022949
Description Sus scrofa ssc-miR-221-5p mature miRNA
Sequence 4 - ACCUGGCAUACAAUGUAGAUUUCUGU - 29
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100