Stem-loop osa-MIR1846d

Accession

MI0008223

Description

Oryza sativa osa-MIR1846d precursor miRNA

Gene family

MIPF0000577; MIR1846

Literature search

9 open access papers mention osa-MIR1846d
(11 sentences)

Sequence

6 reads, 8 reads per million, 2 experiments

ugccugucccUCCCACCGAGCAGCCGGAUCUCccagugaguaggcccgggccgccagauccggugaccccggucuccucgccggugUAUCCGGCGCCGCAGGGAGGgacgagagcc
.(((((((((((((..((.((.(((((((..(((.(((((.(((((.(((.((((......)))).))).))))).))))).)).).)))))))))))..))))))))).)).)).

Structure

u  -  -         AC  A  A       CU -  a     u     c   c    ag 
 gc cu gucccUCCC  CG GC GCCGGAU  C cc gugag aggcc ggg cgcc  a
 || || |||||||||  || || |||||||  | || ||||| ||||| ||| ||||   
 cg ga cagGGAGGG  GC CG CGGCCUA  g gg cgcuc ucugg ccc gugg  u
c  a  g         AC  -  -       -U u  c     c     c   a    cc 

Annotation confidence Not enough data

Genome context

Chr1: 39637065-39637180 [+]

Mature osa-miR1846d-5p

• Accession: MIMAT0007764
• Description: Oryza sativa osa-miR1846d-5p mature miRNA
• Sequence: 11 - UCCCACCGAGCAGCCGGAUCUC - 32
• Evidence: experimental ; 454 [1]

Mature osa-miR1846d-3p

• Accession: MIMAT0007765
• Description: Oryza sativa osa-miR1846d-3p mature miRNA
• Sequence: 87 - UAUCCGGCGCCGCAGGGAGG - 106
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465