miRBase entry: osa-MIR1861a

Stem-loop osa-MIR1861a


Accession
MI0008247
Description
Oryza sativa osa-MIR1861a precursor miRNA
Gene family
MIPF0000567; MIR1861

Literature search
8 open access papers mention osa-MIR1861a
(51 sentences)

Sequence

30 reads, 22 reads per million, 2 experiments
uuguguugcauauucuuaggccUGAUCUUGAGGCAGAAACUGAGuaguuggugaacucgcucuauguuguucguucacucgcgacacgguuccugucccaagaucgagucuaugaauauacaaauguga
.....(((.((((((.(((((.((((((((.(((((.(((((.((.((.(((((((..((........))..))))))).)).)).))))).))))).)))))))).))))).)))))).)))......

Structure
-uugug   c      u     c        A     A     A  a  u       uc  ucu 
      uug auauuc uaggc UGAUCUUG GGCAG AACUG Gu gu ggugaac  gc   a
      ||| |||||| ||||| |||||||| ||||| ||||| || || |||||||  ||    
      aac uauaag aucug gcuagaac cuguc uuggc ca cg ucacuug  ug   u
agugua   a      u     a        c     c     a  g  c       cu  uug 


Annotation confidence Not enough data
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Genome context
Chr1: 15049772-15049900 [+]

Database links

Mature osa-miR1861a

Accession MIMAT0007796
Description Oryza sativa osa-miR1861a mature miRNA
Sequence 23 - UGAUCUUGAGGCAGAAACUGAG - 44
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465