Stem-loop sequence osa-MIR1861c

Accession

MI0008249 (change log)

Description

Oryza sativa miR1861c stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

8 open access papers mention osa-MIR1861c
(47 sentences)

Stem-loop

   -  g g          u   a c  a      ag         a     uc u 
5'  cg u uugcauauuc uag c cg ucuugu  caagaacug guagu  g u
    || | |||||||||| ||| | || ||||||  ||||||||| |||||  |  
3'  gu g aacguauaag guc g gc agaaca  guucuuggc caucg  c a
   g  g a          u   c a  c      cu         g     cu a 

Deep sequencing

5 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr2: 20716174-20716280 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1861c

• osa-MIR1861b: Chr2: 20715962-20716079 [+]
• osa-MIR1861c: Chr2: 20716174-20716280 [+]

Database links

• miRBase Tracker:MI0008249

Mature sequence osa-miR1861c

• Accession: MIMAT0007798
• Sequence: 23 - cgaucuuguagcaagaacugag - 44
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00004115AE_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).