Stem-loop osa-MIR1861c

Accession

MI0008249

Description

Oryza sativa osa-MIR1861c precursor miRNA

Gene family

MIPF0000567; MIR1861

Literature search

8 open access papers mention osa-MIR1861c
(47 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments

cgguguugcauauucuuagaccCGAUCUUGUAGCAAGAACUGAGuaguucguuaacucgcuacgcgguucuugucacaagaccgagccugugaauaugcaaaggugg
((.(.((((((((((.(((.(.((.((((((.((((((((((.(((((..........))))).)))))))))).)))))).)).).))).)))))))))).).)).

Structure

-  g g          u   a c  A      A          A     ucgu 
 cg u uugcauauuc uag c CG UCUUGU GCAAGAACUG Guagu    u
 || | |||||||||| ||| | || |||||| |||||||||| |||||     
 gu g aacguauaag guc g gc agaaca uguucuuggc caucg    a
g  g a          u   c a  c      c          g     cuca 

Annotation confidence Not enough data

Genome context

Chr2: 20716174-20716280 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861c

Mature osa-miR1861c

• Accession: MIMAT0007798
• Description: Oryza sativa osa-miR1861c mature miRNA
• Sequence: 23 - CGAUCUUGUAGCAAGAACUGAG - 44
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465