Stem-loop osa-MIR1862b

Accession

MI0008262

Description

Oryza sativa osa-MIR1862b precursor miRNA

Gene family

MIPF0000344; MIR818

Literature search

11 open access papers mention osa-MIR1862b
(14 sentences)

Sequence

164 reads, 113 reads per million, 2 experiments

ggucauuuagauagaacauguuucaucucagugcgccuacucccuuagucccaaaauaaauuaaucuuauacaagauuuggcacaucauaguacuacgaaucuggauauacuaggaugugucacauuccguACGAGGUUGGUUUAUUUUGGGACGgagggagggaguaucucggaugccuaccgcaguaucucaugacc
((((((..(((((..........(((((.(((((.((..(((((((.(((((((((((((((((((((.(((..(((.(((((((((.((((((((......)))...))))).))))))))).)))..))).))))))))))))))))))))).))))))))).))).)).)))))..........))))).))))))

Structure

      uu     gaacauguuu     c  -   g  ua       a                     a   aa   u         a     ---   cg 
ggucau  agaua          caucu ag ugc cc  cucccuu gucccaaaauaaauuaaucuu uac  gau uggcacauc uagua   cua  a
||||||  |||||          ||||| || ||| ||  ||||||| ||||||||||||||||||||| |||  ||| ||||||||| |||||   |||   
ccagua  ucuau          guagg uc aug gg  gagggag CAGGGUUUUAUUUGGUUGGAG Aug  uua acuguguag aucau   ggu  a
      -c     gacgccaucc     c  u   a  --       G                     C   cc   c         g     aua   cu 

Annotation confidence Not enough data

Genome context

Chr8: 8341200-8341398 [-]

Mature osa-miR1862b

• Accession: MIMAT0007811
• Description: Oryza sativa osa-miR1862b mature miRNA
• Sequence: 132 - ACGAGGUUGGUUUAUUUUGGGACG - 155
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465