Stem-loop osa-MIR1865

Accession

MI0008266

Description

Oryza sativa osa-MIR1865 precursor miRNA

Literature search

4 open access papers mention osa-MIR1865
(4 sentences)

Sequence

39 reads, 30 reads per million, 2 experiments

cucgaacuacUGCUAGUGAUGGUGAUUCUUCGACacaguauucggcgaguuuugggcuucaucaugcggugcucgacauggugacgaagccugaacuugccaaagacuguCGAAGAAUCGCAGUCACUAGUUGUaauuugacuc
.(((((.(((.(((((((((.((((((((((((((..((.((.(((((((((.(((((((((((((((.....)).))))))))...)))))))))))))).)).)))))))))))))))).))))))))).))).)))))...

Structure

--c     c   U         G              ca  a  c         u     ---        -  g 
   ucgaa uac GCUAGUGAU GUGAUUCUUCGACa  gu uu ggcgaguuu gggcu   ucaucaug cg u
   ||||| ||| ||||||||| ||||||||||||||  || || ||||||||| |||||   |||||||| || g
   aguuu aUG UGAUCACUG CGCUAAGAAGCugu  ca aa ccguucaag uccga   agugguac gc c
cuc     a   U         A              --  g  a         -     agc        a  u 

Annotation confidence Not enough data

Genome context

Chr3: 34000594-34000737 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1865

Mature osa-miR1865-5p

• Accession: MIMAT0007815
• Description: Oryza sativa osa-miR1865-5p mature miRNA
• Sequence: 11 - UGCUAGUGAUGGUGAUUCUUCGAC - 34
• Evidence: experimental ; 454 [1]

Mature osa-miR1865-3p

• Accession: MIMAT0007816
• Description: Oryza sativa osa-miR1865-3p mature miRNA
• Sequence: 111 - CGAAGAAUCGCAGUCACUAGUUGU - 134
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465