miRBase entry: osa-MIR1869

Stem-loop osa-MIR1869


Accession
MI0008272
Description
Oryza sativa osa-MIR1869 precursor miRNA
Gene family
MIPF0000745; MIR2118


Sequence

1 reads, 1 reads per million, 1 experiments
aaggaacaccUGAGAACAAUAGGCAUGGGAGGUAuugggaaaacacaggaacauauugugaccccuaauuuuaaagggaaauaaugguugaggcuuuccuccauguucccaugccuaaugcucuuaggugcucuuuuu
(((((.(((((((((.((.((((((((((((.....((((((.(.....(((.((((((...((((........))))..)))))))))...).)))))).....)))))))))))).)).))))))))).)))))..

Structure
--     a         A  A            GUAuu      a acagg   a      gac    aau 
  aagga caccUGAGA CA UAGGCAUGGGAG     gggaaa c     aac uauugu   cccu   u
  ||||| ||||||||| || ||||||||||||     |||||| |     ||| ||||||   ||||    
  uuucu guggauucu gu auccguacccuu     uccuuu g     uug guaaua   ggga   u
uu     c         c  a            guacc      c --gag   -      -aa    aau 


Annotation confidence Not enough data
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Genome context
Chr4: 21644852-21644989 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from osa-MIR1869
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1869

Accession MIMAT0007822
Description Oryza sativa osa-miR1869 mature miRNA
Sequence 11 - UGAGAACAAUAGGCAUGGGAGGUA - 34
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465