miRBase entry: osa-MIR1880

Stem-loop osa-MIR1880


Accession
MI0008286
Description
Oryza sativa osa-MIR1880 precursor miRNA


Sequence

23 reads, 25 reads per million, 2 experiments
guuccgcuugugaaaaucgauuuUUCCAAGCGGGCCACUUAAGCAUUccgccuguaaaauuaaagguauuuucgcagccggaucgcuuaagugguccgccuggauaaaucgauuuucguaggcggauga
..(((((((((((((((((((((.((((.(((((((((((((((..((((.(((((((((.......))))).)))).))))..))))))))))))))).)))).)))))))))))))))))))))...

Structure
-gu                     U    A               AU    c    -     ua 
   uccgcuugugaaaaucgauuu UCCA GCGGGCCACUUAAGC  Uccg cugu aaaau  a
   ||||||||||||||||||||| |||| |||||||||||||||  |||| |||| |||||  a
   aggcggaugcuuuuagcuaaa aggu cgccuggugaauucg  aggc gacg uuuua  g
agu                     u    c               cu    c    c     ug 


Annotation confidence Not enough data
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Genome context
Chr11: 13959877-13960005 [+]

Database links

Mature osa-miR1880

Accession MIMAT0007837
Description Oryza sativa osa-miR1880 mature miRNA
Sequence 24 - UUCCAAGCGGGCCACUUAAGCAUU - 47
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465