Stem-loop bra-MIR1885a

Accession

MI0008302

Description

Brassica rapa bra-MIR1885a precursor miRNA

Gene family

MIPF0001505; MIR1885

Literature search

6 open access papers mention bra-MIR1885a
(12 sentences)

Sequence

cauccugucuucacgagcuuccucuagaagaugugcgcagagucuuucuaagucacacucauaaaaaauucaaagaaaaggaaucauacuuucauugauaaugaaaucaauagagagaaugauacugagcucuuacauucgauuagaugcgauaaucuuauccucuaauugcuuguaagagcugaugaccaauggaucauccucuauugaucucuuCAUCAAUGAAAGGUAUGAUUCCcuuucuuugaaaucacuuuugaaugugacuaagaaagccucuacguacaucuucuccgcggaagcucaugaaaacaagguag
...(((((.((((.((((((((.(.((((((((((((.((((.((((((.(((((((.(((.......((((((((((.((((((((((((((((((((...((.((((((((((............((((((((((..((((((((.(.((((....)))))))))))))..))))))))))(((((((...)).))))))))))))))).))...)))))))))).)))))))))).))))))))))........))).))))))).)))))).)))).))))))))))))..).)))))))).)))).)).)))...

Structure

cau   -  c    c        u -u            c    u      a       c   -uaaaaaa          a          -          aau  a          ------agaaugauacug          uu        u c    a 
   ccu gu uuca gagcuucc c  agaagaugugcg agag cuuucu agucaca uca        uucaaagaaa ggaaucauac uuucauugau   ga aucaauagag                  agcucuuaca  cgauuaga g gaua u
   ||| || |||| |||||||| |  |||||||||||| |||| |||||| ||||||| |||        |||||||||| |||||||||| ||||||||||   || ||||||||||                  ||||||||||  |||||||| | ||||  
   gga ca aagu cucgaagg g  ucuucuacaugc ucuc gaaaga ucagugu agu        aaguuucuuu CCUUAGUAUG AAAGUAACUA   cu uaguuaucuc                  ucgagaaugu  guuaaucu c cuau c
gau   a  a    a        c cc            a    c      a       a   uuucacua          c          G          Cuu  c          cuacuagguaaccaguag          uc        - -    u 

Annotation confidence Not enough data

Genome context

chrA6: 25298379-25298698 [+]

Mature bra-miR1885a

• Accession: MIMAT0009213
• Description: Brassica rapa bra-miR1885a mature miRNA
• Sequence: 217 - CAUCAAUGAAAGGUAUGAUUCC - 238
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452


2. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038