Stem-loop sly-MIR167a

Accession

MI0008360

Description

Solanum lycopersicum sly-MIR167a precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

24 open access papers mention sly-MIR167a
(228 sentences)

Sequence

ucgugcagcacuagcaguUGAAGCUGCCAGCAUGAUCUAaacuuuccuuuuaguucaaauauaauucgaggaaagaucagaucauguggcagccuuaccugucaaugccaucacga
(((((..(((...((((.(((.(((((((.((((((((...((((((((..((((.......)))).))))))))...))))))))))))))).))).))))...)))...)))))

Structure

     -ca   cua    u   A       G        Aaa        uu    ca 
ucgug   gca   gcag UGA GCUGCCA CAUGAUCU   cuuuccuu  aguu  a
|||||   |||   |||| ||| ||||||| ||||||||   ||||||||  ||||  a
agcac   cgu   uguc auu cgacggu guacuaga   gaaaggag  uuaa  u
     uac   aac    c   c       -        cua        -c    ua 

Annotation confidence Not enough data

Genome context

chr6: 49339356-49339471 [-]

Mature sly-miR167a

• Accession: MIMAT0007917
• Description: Solanum lycopersicum sly-miR167a mature miRNA
• Sequence: 19 - UGAAGCUGCCAGCAUGAUCUA - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7