Stem-loop sequence sly-MIR169a

Accession

MI0008361 (change log)

Description

Solanum lycopersicum miR169a stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

17 open access papers mention sly-MIR169a
(51 sentences)

Stem-loop

         -ua   uuu      a uu         c  g   c         ug          c --a     ug 
5' ggucua   agg   gcauga g  gaagagagu aa uug agccaagga  acuugccgga c   aaagu  u
   ||||||   |||   |||||| |  ||||||||| || ||| |||||||||  |||||||||| |   |||||  g
3' ccagau   ucc   uguacu c  cuucucucg uu aau ucgguuuuu  ugaacggccu g   uuuua  a
         ugc   uau      - uu         u  g   a         gu          u auc     cc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr7: 4225343-4225491 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sly-MIR169a

• sly-MIR169a: chr7: 4225343-4225491 [+]
• sly-MIR5302b: chr7: 4228975-4229187 [+]

Database links

• RNAcentral:URS000075B56E_4081
• miRBase Tracker:MI0008361

Mature sequence sly-miR169a

• Accession: MIMAT0007918
• Sequence: 41 - cagccaaggaugacuugccgg - 61
• Evidence: experimental; 454 [1]

References

1. PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).