Stem-loop sly-MIR169a

Accession

MI0008361

Description

Solanum lycopersicum sly-MIR169a precursor miRNA

Literature search

17 open access papers mention sly-MIR169a
(52 sentences)

Sequence

ggucuauaagguuugcaugaaguugaagagagucaaguugCAGCCAAGGAUGACUUGCCGGaccaaaaguugugaccauuuucuaguuccggcaaguuguuuuuggcuauaaguuugcucucuucuucucauguuauccucguuagacc
((((((..(((...((((((.(..(((((((((.((.(((.(((((((((((((((((((((.(.(((((.......)))))...).))))))))))))))))))))).))).)).)))))))))..)))))))...)))...))))))

Structure

      -ua   uuu      a uu         c  g   C                     c --a     ug 
ggucua   agg   gcauga g  gaagagagu aa uug AGCCAAGGAUGACUUGCCGGa c   aaagu  u
||||||   |||   |||||| |  ||||||||| || ||| ||||||||||||||||||||| |   |||||  g
ccagau   ucc   uguacu c  cuucucucg uu aau ucgguuuuuguugaacggccu g   uuuua  a
      ugc   uau      - uu         u  g   a                     u auc     cc 

Annotation confidence Low

Genome context

chr7: 4225343-4225491 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR169a

Mature sly-miR169a

• Accession: MIMAT0007918
• Description: Solanum lycopersicum sly-miR169a mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGG - 61
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609