Stem-loop sly-MIR171b

Accession

MI0008366

Description

Solanum lycopersicum sly-MIR171b precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

22 open access papers mention sly-MIR171b
(184 sentences)

Sequence

acgagAUAUUGGUGCGGUUCAAUUAGaaagcgcacuucuuuauauauagaacuucguuauuuaaUUGAGCCGUGCCAAUAUCACGu
(((.(((((((((((((((((((((((.((((...((((........))))...)))).))))))))))))))))))))))).)))

Structure

   a                       a    cac    uua 
acg gAUAUUGGUGCGGUUCAAUUAGa agcg   uucu   u
||| ||||||||||||||||||||||| ||||   ||||    
uGC CUAUAACCGUGCCGAGUUaauuu uugc   aaga   a
   A                       a    uuc    uau 

Annotation confidence Not enough data

Genome context

chr2: 44783518-44783603 [-]

Mature sly-miR171b-3p

• Accession: MIMAT0007923
• Description: Solanum lycopersicum sly-miR171b-3p mature miRNA
• Sequence: 65 - UUGAGCCGUGCCAAUAUCACG - 85
• Evidence: experimental ; 454 [1]

Mature sly-miR171b-5p

• Accession: MIMAT0037334
• Description: Solanum lycopersicum sly-miR171b-5p mature miRNA
• Sequence: 6 - AUAUUGGUGCGGUUCAAUUAG - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195