Stem-loop sequence sly-MIR171c

Accession

MI0008367 (change log)

Description

Solanum lycopersicum miR171c stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

24 open access papers mention sly-MIR171c
(131 sentences)

Stem-loop

      --au    --gaa      a                   g      c  u        a 
5' caa    ggau     uacacg gauauuggugcgguucaau agaaag ag acuuaaga c
   |||    ||||     |||||| ||||||||||||||||||| |||||| || ||||||||  
3' guu    ucua     augugc cuauaaccgcgccgaguua uuuuuc uc ugaguuuu a
      gauu    aaucg      a                   g      a  -        u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr12: 519779-519899 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075A9F8_4081
• miRBase Tracker:MI0008367

Mature sequence sly-miR171c

• Accession: MIMAT0007924
• Sequence: 22 - uauuggugcgguucaaugaga - 42
• Evidence: experimental; 454 [1]

References

1. PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).