Stem-loop sly-MIR395a

Accession

MI0008369

Description

Solanum lycopersicum sly-MIR395a precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

12 open access papers mention sly-MIR395a
(47 sentences)

Sequence

agggcuuacuuugauguuggaagccuugCUGAAGUGUUUGGGGGAACUCCcggguugacuuugaaaauuacgcaaacaaguauauauaaaugcaugaguacguauuagcuaaagaugaugaguacaauauugauucauguaccuuuggaguucccuugaccacuucaugagagcuuaauauuugauuguuugaaguccu
(((((((((...(((((((..(((((((.(((((((.(((((((((((((.((((.............(((........))).........((((((((((.(((((........))))).)))).........))))))))))..))))))))))))).))))))))))).)))))))))).....))...)))))))

Structure

       ---  --uuu       ga   -    C       U             -c    ugacuuugaaaauuacgcaaacaaguauauauaaau      ---------    g     gcu 
agggcuu   ac     gauguug  agc cuug UGAAGUG UUGGGGGAACUCC  gggu                                    gcauga         guac uauua   a
|||||||   ||     |||||||  ||| |||| ||||||| |||||||||||||  ||||                                    ||||||         |||| |||||    
uccugaa   ug     uuauaau  ucg gagu acuucac aguucccuugagg  ucca                                    uguacu         caug guagu   a
       guu  uuagu       --   a    -       c             uu    ------------------------------------      uaguuauaa    a     aga 

Annotation confidence Not enough data

Genome context

chr5: 1703152-1703350 [+]

Mature sly-miR395a

• Accession: MIMAT0007926
• Description: Solanum lycopersicum sly-miR395a mature miRNA
• Sequence: 29 - CUGAAGUGUUUGGGGGAACUCC - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609