Stem-loop sequence sly-MIR395a

Accession

MI0008369 (change log)

Description

Solanum lycopersicum miR395a stem-loop

Gene family

MIPF0000016; MIR395

Literature search

12 open access papers mention sly-MIR395a
(46 sentences)

Stem-loop

          ---  --uuu       ga   -    c       u ug          -c    ugacuuugaaaauuacgcaaacaaguauauauaaaugcaug 
5' agggcuu   ac     gauguug  agc cuug ugaagug u  ggggaacucc  gggu                                         a
   |||||||   ||     |||||||  ||| |||| ||||||| |  ||||||||||  ||||                                         g
3' uccugaa   ug     uuauaau  ucg gagu acuucac a  ucccuugagg  ucca                                         u
          guu  uuagu       --   a    -       c gu          uu    uguacuuaguuauaacaugaguaguagaaaucgauuaugca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr5: 1703152-1703350 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075CA3D_4081
• miRBase Tracker:MI0008369

Mature sequence sly-miR395a

• Accession: MIMAT0007926
• Sequence: 29 - cugaaguguuugggggaacucc - 50
• Evidence: experimental; 454 [1]

References

1. PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).