miRBase entry: tca-mir-13b

Stem-loop tca-mir-13b


Accession
MI0008902
Description
Tribolium castaneum tca-mir-13b precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
0 open access papers mention tca-mir-13b
(0 sentences)

Sequence

ugcccuauCAGUCAAUUUGGUUGUGAAACCUaguauuuauucgggUAUCACAGCCAUUUUGACGAGUuugguug
.(((..((..(((((..(((((((((.(((((((....))).)))).)))))))))..)))))..))..)))..

Structure
-u   cu  CA     UU         A    -   a 
  gcc  au  GUCAA  UGGUUGUGA ACCU agu u
  |||  ||  |||||  ||||||||| |||| |||  
  ugg  UG  CAGUU  ACCGACACU Uggg uua u
gu   uu  AG     UU         A    c   u 


Annotation confidence Not enough data
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Genome context
ChLG3: 562739-562812 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-13b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-13b-3p

Accession MIMAT0008360
Description Tribolium castaneum tca-miR-13b-3p mature miRNA
Sequence 46 - UAUCACAGCCAUUUUGACGAGU - 67
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-13b-5p

Accession MIMAT0019104
Description Tribolium castaneum tca-miR-13b-5p mature miRNA
Sequence 9 - CAGUCAAUUUGGUUGUGAAACCU - 31
Evidence experimental
SOLID [2]

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696