miRBase entry: tca-mir-210

Stem-loop tca-mir-210


Accession
MI0008918
Description
Tribolium castaneum tca-mir-210 precursor miRNA
Gene family
MIPF0000086; mir-210

Literature search
1 open access papers mention tca-mir-210
(1 sentences)

Sequence

cucacugcAGCUGCUGGACGCUGCACAAGauuagauauuuuagaacucUUGUGCGUGUGACAGCGGCUAuuguggg
(((((...((((((((.((((.(((((((((((((...)))))...))))))))))))..))))))))...)))))

Structure
     ugc        -G    U        ---     u 
cucac   AGCUGCUG  ACGC GCACAAGa   uuaga  
|||||   ||||||||  |||| ||||||||   ||||| a
gggug   UCGGCGAC  UGUG CGUGUUcu   gauuu  
     uuA        AG    -        caa     u 


Annotation confidence Not enough data
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Genome context
ChLG4: 6990664-6990739 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-210
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-210-3p

Accession MIMAT0008376
Description Tribolium castaneum tca-miR-210-3p mature miRNA
Sequence 49 - UUGUGCGUGUGACAGCGGCUA - 69
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-210-5p

Accession MIMAT0019120
Description Tribolium castaneum tca-miR-210-5p mature miRNA
Sequence 9 - AGCUGCUGGACGCUGCACAAG - 29
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696