Stem-loop der-mir-310a

Accession

MI0009095

Description

Drosophila erecta der-mir-310a precursor miRNA

Gene family

MIPF0000566; mir-310

Sequence

acacaaauauuugcAGGACGGGUCGUGUGUCAAUGUAuugaucucuuagcuaUAUUGCACACUUCCCGCCCUUUaaauguccaguguu
((((..(((((((.(((.((((..(((((.(((((((((((....)))).))))))))))))..)))).))).)))))))...)))).

Structure

-    -aa       c   A    UC     U       -    u 
 acac   auauuug AGG CGGG  GUGUG CAAUGUA uuga c
 ||||   ||||||| ||| ||||  ||||| ||||||| ||||  
 ugug   uguaaaU UCC GCCC  CACAC GUUAUau gauu u
u    acc       U   C    UU     -       c    c 

Annotation confidence Not enough data

Genome context

scaffold_4845: 10616434-10616521 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from der-mir-310a

Mature der-miR-310a-3p

• Accession: MIMAT0008553
• Description: Drosophila erecta der-miR-310a-3p mature miRNA
• Sequence: 53 - UAUUGCACACUUCCCGCCCUUU - 74
• Evidence: experimental ; Illumina [2]

Mature der-miR-310a-5p

• Accession: MIMAT0037341
• Description: Drosophila erecta der-miR-310a-5p mature miRNA
• Sequence: 15 - AGGACGGGUCGUGUGUCAAUGUA - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250