miRBase entry: 24985917

Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines

PubMed ID 24985917
Authors "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
Journal "Genome Res
Volume 24
Pages 1236-1250

There are 183 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
der-mir-310b MI0009024 None scaffold_4845 10617892 10617979 - High
der-mir-311a MI0009028 None scaffold_4845 10616549 10616628 - High
der-mir-311b-1 MI0009060 None scaffold_4845 10616837 10616911 - High
der-mir-311c MI0009062 None scaffold_4845 10618008 10618087 - High
der-mir-311b-2 MI0009065 None scaffold_4845 10618294 10618368 - High
der-mir-312-1 MI0009077 None scaffold_4845 10618162 10618227 - High
der-mir-312-2 MI0009089 None scaffold_4845 10616702 10616770 - High
der-mir-310a MI0009095 None scaffold_4845 10616434 10616521 - High
dse-mir-310 MI0009341 None scaffold_1 14025480 14025568 - -
dse-mir-311 MI0009361 None scaffold_1 14025606 14025689 - High
dse-mir-312 MI0009372 None scaffold_1 14025763 14025828 - High
dse-mir-313 MI0009394 None scaffold_1 14025902 14025967 - High
dsi-mir-310 MI0009406 None ref|NT_479534.1| 16995807 16995895 - -
dsi-mir-311 MI0009422 None ref|NT_479534.1| 16995932 16996017 - -
dsi-mir-313 MI0009439 None ref|NT_479534.1| 16996238 16996303 - -
dsi-mir-312 MI0009440 None ref|NT_479534.1| 16996099 16996164 - -
dya-mir-311a MI0009664 None chr2R 12724827 12724906 + -
dya-mir-310 MI0009665 None chr2R 12724935 12725022 + -
dya-mir-312 MI0009683 None chr2R 12724700 12724766 + -
dya-mir-311b MI0009696 None chr2R 12724551 12724629 + -
dsi-mir-977 MI0011729 None ref|NC_029795.1| 18331041 18331155 + -
dsi-mir-978a MI0011730 None ref|NC_029795.1| 18333220 18333305 + -
dsi-mir-991 MI0011733 None ref|NT_479534.1| 16997641 16997758 - -
dsi-mir-992 MI0011764 None ref|NT_479534.1| 16997769 16997848 - -
dsi-mir-975 MI0011772 None ref|NC_029795.1| 18330777 18330896 + -
dsi-mir-976 MI0011773 None ref|NC_029795.1| 18330915 18331007 + -
dsi-mir-978b MI0011774 None ref|NC_029795.1| 18333219 18333304 - -
dsi-mir-982c MI0011782 None ref|NC_029795.1| 3953270 3953374 - -
dsi-mir-982b MI0011783 None ref|NC_029795.1| 3953671 3953774 - -
dsi-mir-982a MI0011784 None ref|NC_029795.1| 3954312 3954403 - -
dsi-mir-303 MI0011785 None ref|NC_029795.1| 3955001 3955086 - -
dsi-mir-2582a MI0011788 None ref|NC_029795.1| 3954152 3954267 - -
dsi-mir-2582b MI0011790 None ref|NC_029795.1| 3953540 3953618 - -
dsi-mir-983a MI0011791 None ref|NC_029795.1| 3957085 3957204 - -
dvi-mir-973 MI0029263 None scaffold_13042 918343 918437 - High
dvi-mir-976 MI0029264 None scaffold_13042 906737 906829 - High
dvi-mir-9539 MI0029278 None scaffold_12855 6284648 6284774 + Medium
dvi-mir-9540 MI0029279 None scaffold_12855 6284791 6284883 + Medium
dvi-mir-9542a MI0029280 None scaffold_12970 9418994 9419089 - High
dvi-mir-9543a MI0029281 None scaffold_12970 9427846 9427976 - High
dvi-mir-9544a MI0029282 None scaffold_12970 9428974 9429102 - Medium
dvi-mir-9545 MI0029283 None scaffold_12970 9429441 9429543 - High
dvi-mir-9547 MI0029285 None scaffold_13042 917881 917955 - High
dvi-mir-974-1 MI0029290 None scaffold_13042 917735 917829 - High
dvi-mir-974-2 MI0029291 None scaffold_13042 917557 917651 - High
dvi-mir-975 MI0029292 None scaffold_13042 906914 907008 - Medium
dvi-mir-977 MI0029293 None scaffold_13042 906576 906670 - High
dsi-mir-2498a MI0030848 None ref|NT_479534.1| 16997131 16997191 - -
dsi-mir-2498c MI0030849 None ref|NT_479534.1| 16997288 16997343 - -
dsi-mir-2498b MI0030850 None ref|NT_479534.1| 16996765 16996823 - -
dsi-mir-983b MI0030851 None ref|NC_029795.1| 3957116 3957174 + -
dsi-mir-9680 MI0030853 None ref|NC_029795.1| 18314139 18314198 + -
dsi-mir-972 MI0030854 None ref|NC_029795.1| 18322946 18323048 + -
dsi-mir-973 MI0030855 None ref|NC_029795.1| 18323310 18323404 + -
dsi-mir-4966-1 MI0030857 None ref|NC_029795.1| 18330183 18330241 + -
dsi-mir-4966-2 MI0030858 None ref|NC_029795.1| 18330348 18330414 + -
dsi-mir-4966-3 MI0030859 None ref|NC_029795.1| 18330511 18330584 + -
dsi-mir-9369 MI0030860 None ref|NC_029795.1| 18323144 18323204 + -
dsi-mir-974 MI0030861 None ref|NC_029795.1| 18323461 18323523 + -
dsi-mir-2499 MI0030862 None ref|NC_029795.1| 18328888 18328946 + -
dse-mir-2498b MI0030863 None scaffold_1 14026439 14026497 - High
dse-mir-2498a MI0030865 None scaffold_1 14026948 14027011 - Medium
dse-mir-991 MI0030867 None scaffold_1 14027438 14027499 - High
dse-mir-992 MI0030868 None scaffold_1 14027554 14027612 - High
dse-mir-982c-1 MI0030869 None scaffold_4 2465414 2465476 + Medium
dse-mir-982c-2 MI0030870 None scaffold_4 2466054 2466116 + Medium
dse-mir-303 MI0030872 None scaffold_4 2464338 2464408 + -
dse-mir-982b-1 MI0030873 None scaffold_4 2465009 2465082 + Medium
dse-mir-982b-2 MI0030874 None scaffold_4 2465648 2465719 + Medium
dse-mir-2582-1 MI0030875 None scaffold_4 2465160 2465217 + High
dse-mir-2582-2 MI0030876 None scaffold_4 2465800 2465857 + High
dse-mir-983 MI0030877 None scaffold_4 2462240 2462298 + High
dse-mir-973 MI0030878 None scaffold_8 1727993 1728061 + -
dse-mir-976 MI0030879 None scaffold_8 1735259 1735320 + -
dse-mir-4966-1 MI0030880 None scaffold_8 1734680 1734739 + High
dse-mir-4966-2 MI0030882 None scaffold_8 1734810 1734963 + Medium
dse-mir-975 MI0030885 None scaffold_8 1735124 1735214 + High
dse-mir-974 MI0030886 None scaffold_8 1728136 1728198 + High
dse-mir-2499 MI0030887 None scaffold_8 1733353 1733412 + High
dse-mir-978a MI0030888 None scaffold_8 1737880 1737942 + -
dse-mir-978b MI0030889 None scaffold_8 1737879 1737938 - -
dse-mir-977 MI0030890 None scaffold_8 1735396 1735459 + High
dse-mir-9680 MI0030891 None scaffold_8 1718473 1718532 + -
dse-mir-9369 MI0030892 None scaffold_8 1727807 1727868 + High
dse-mir-9685 MI0030893 None scaffold_0 15993641 15993696 - -
dya-mir-992 MI0030894 None chr2R 12723683 12723748 + -
dya-mir-2498 MI0030895 None chr2R 12723909 12723977 + -
dya-mir-9681 MI0030897 None chr2R 12724136 12724190 + -
dya-mir-991 MI0030898 None chr2R 12723801 12723862 + -
dya-mir-9682 MI0030900 None chrX 4178218 4178277 + -
dya-mir-303 MI0030903 None chrX 4177759 4177819 + -
dya-mir-9683 MI0030904 None chrX 11901555 11901617 - -
dya-mir-975 MI0030906 None chrX 11885970 11886060 - -
dya-mir-978 MI0030907 None chrX 11883759 11883850 - -
dya-mir-2499 MI0030908 None chrX 11887463 11887525 - -
dya-mir-976 MI0030909 None chrX 11885828 11885885 - -
dya-mir-9690 MI0030910 None chrX 11886162 11886224 - -
dya-mir-977 MI0030911 None chrX 11885659 11885723 - -
der-mir-9681 MI0030912 None scaffold_4845 10618728 10618783 - High
der-mir-991-1 MI0030913 None scaffold_4845 10617587 10617649 - High
der-mir-991-2 MI0030914 None scaffold_4845 10619061 10619123 - High
der-mir-992-1 MI0030915 None scaffold_4845 10619176 10619234 - High
der-mir-2498a MI0030916 None scaffold_4845 10618951 10619010 - High
der-mir-2498b MI0030917 None scaffold_4845 10617479 10617536 - High
der-mir-992-2 MI0030918 None scaffold_4845 10617702 10617760 - High
der-mir-9691 MI0030919 None scaffold_4690 1633026 1633099 - High
der-mir-983a MI0030921 None scaffold_4690 1633140 1633202 - High
der-mir-983b MI0030922 None scaffold_4690 1633142 1633205 + High
der-mir-9682 MI0030923 None scaffold_4690 1630746 1630805 - High
der-mir-2499 MI0030924 None scaffold_4690 9687401 9687461 + Medium
der-mir-975 MI0030925 None scaffold_4690 9688771 9688861 + High
der-mir-977 MI0030926 None scaffold_4690 9689075 9689177 + Medium
der-mir-978 MI0030927 None scaffold_4690 9691198 9691289 + High
der-mir-974 MI0030928 None scaffold_4690 9682476 9682538 + High
der-mir-976 MI0030929 None scaffold_4690 9688930 9688987 + High
der-mir-973 MI0030930 None scaffold_4690 9682325 9682395 + High
der-mir-9683 MI0030931 None scaffold_4690 9672360 9672417 + High
der-mir-9680 MI0030932 None scaffold_4690 9673197 9673257 + High
dvi-mir-9692 MI0030933 None scaffold_13042 912386 912483 - High
dvi-mir-9693 MI0030934 None scaffold_13042 907106 907161 - Medium
dvi-mir-9694 MI0030935 None scaffold_13042 907106 907161 + High
dvi-mir-9695 MI0030936 None scaffold_13042 903358 903445 - High
dvi-mir-9696a MI0030937 None scaffold_13042 903188 903280 - High
dvi-mir-9696b MI0030938 None scaffold_13042 903198 903268 + Medium
dvi-mir-9697 MI0030939 None scaffold_13042 903020 903103 - Medium
dvi-mir-9698 MI0030940 None scaffold_13042 902871 902931 - High
dvi-mir-9699 MI0030941 None scaffold_13042 902700 902761 - High
dvi-mir-9538b MI0030943 None scaffold_12855 6282879 6282946 + High
dvi-mir-9700a MI0030944 None scaffold_12855 6284216 6284276 - High
dvi-mir-9700b MI0030945 None scaffold_12855 6284220 6284277 + High
dvi-mir-9701a MI0030946 None scaffold_12855 6284350 6284416 - High
dvi-mir-9701b MI0030947 None scaffold_12855 6284353 6284417 + High
dvi-mir-9702 MI0030948 None scaffold_12855 6286659 6286719 + High
dvi-mir-9703 MI0030949 None scaffold_12855 6286827 6286888 + High
dvi-mir-9704-1 MI0030950 None scaffold_12723 4641314 4641373 - High
dvi-mir-9705-2 MI0030951 None scaffold_12723 4641044 4641104 - High
dvi-mir-9706a-1 MI0030952 None scaffold_12723 4640891 4640948 - High
dvi-mir-9706b-1 MI0030953 None scaffold_12723 4640892 4640954 + Medium
dvi-mir-9707-1 MI0030954 None scaffold_12723 4640770 4640832 - High
dvi-mir-9704-2 MI0030955 None scaffold_12963 329857 329951 + High
dvi-mir-9705-1 MI0030956 None scaffold_12963 330138 330197 + High
dvi-mir-9707-2 MI0030959 None scaffold_12963 330393 330485 + High
dvi-mir-9708a MI0030960 None scaffold_13042 2033003 2033121 - High
dvi-mir-9708b MI0030961 None scaffold_13042 2032720 2032835 - High
dvi-mir-9708c MI0030962 None scaffold_13042 2032606 2032669 - High
dvi-mir-9708d MI0030963 None scaffold_13042 2032476 2032534 - High
dvi-mir-9544c MI0030964 None scaffold_12970 9429631 9429694 - High
dvi-mir-9544b MI0030965 None scaffold_12970 9429010 9429070 + High
dvi-mir-9709 MI0030966 None scaffold_12970 9428722 9428838 - -
dvi-mir-9541b MI0030967 None scaffold_12970 9428404 9428468 - Medium
dvi-mir-9541a MI0030968 None scaffold_12970 9428406 9428469 + Medium
dvi-mir-9710 MI0030969 None scaffold_12970 9428001 9428064 - High
dvi-mir-9711 MI0030971 None scaffold_12970 9427098 9427154 - High
dvi-mir-9712 MI0030972 None scaffold_12970 9426825 9426912 - Medium
dvi-mir-9713 MI0030973 None scaffold_12970 9426638 9426704 - High
dvi-mir-9714 MI0030974 None scaffold_12970 9426640 9426709 + High
dvi-mir-9542d MI0030975 None scaffold_12970 9419392 9419452 - High
dvi-mir-9542b MI0030977 None scaffold_12970 9418038 9418099 - High
dvi-mir-9542e MI0030978 None scaffold_12970 9417366 9417426 - High
dvi-mir-9542c MI0030979 None scaffold_12970 9416655 9416716 - High
dvi-mir-9716 MI0030980 None scaffold_12855 2693707 2693761 - High
dvi-mir-9717 MI0030981 None scaffold_13047 1194059 1194115 + -
dvi-mir-9719 MI0030984 None scaffold_13042 2032315 2032396 - High
dvi-mir-9720 MI0030985 None scaffold_12970 9426838 9426903 + Medium
dvi-mir-9721 MI0030986 None scaffold_12970 9419681 9419786 - High
dse-mir-184 MI0009384 None scaffold_1 6740024 6740111 - -
dse-bantam MI0009337 None scaffold_2 662657 662737 + High
dpe-mir-184 MI0009255 None scaffold_2 863164 863251 + -
dpe-bantam MI0009275 None scaffold_29 844621 844701 - -
dan-mir-184 MI0008971 None ref|NW_001939294.1| 16524586 16524673 - -
dan-bantam MI0008946 None ref|NW_001939293.1| 6520594 6520674 - -
dps-mir-184 MI0001326 None ref|NC_046680.1| 4314020 4314119 + High
dps-bantam MI0001287 None ref|NC_046683.1| 64631104 64631184 + High
dme-mir-184 MI0000354 120037 chr2R 13329402 13329501 - High
dme-bantam MI0000387 54356 chr3L 642208 642288 + High
dsi-mir-184 MI0009471 None ref|NT_479534.1| 9885339 9885426 - -
dsi-bantam MI0009426 None ref|NT_479535.1| 606933 607013 + High
der-mir-184 MI0009050 None scaffold_4845 16598106 16598193 + High
der-bantam MI0009074 None scaffold_4784 648344 648424 + High
dya-mir-184 MI0009702 None chr2R 7742268 7742354 + -
dya-bantam MI0009631 None chr3L 629654 629734 + -
mmu-mir-184 MI0000226 1109 9 89684313 89684381 - -
hsa-mir-184 MI0000481 1603 chr15 79209788 79209871 + High



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